Program


[July 28 ][July 29 ][July 30 ]

July 28

9:00-10:00 【Invited Speech】
Prof. Akinori Kidera(Yokohama City University)
Title:　MULTI-SCALE/MULTI-PHYSICS SIMULATIONS OF PROTEIN FUNCTIONS
タンパク質機能のマルチスケール／マルチフィジックス シミュレーション
Abstract
　　
10:00-10:25 【Talk Session①】Protein and structure
Takatsugu Hirokawa(Team Leader, Molecular Modeling ＆ Drug Design Team)
Title:　MOLECULAR MODELING OF G-PROTEIN COUPLED RECEPTORS USING HYBRID TEMPLATES APPROARCH.
ハイブリッドテンプレートを用いたGタンパク質共役型受容体のモデリング
Abstract
　　
10:25-10:50 【Talk Session①】Protein and structure
Satoshi Yamasaki(AIST Research Staff, Molecular Function Team)
Title:　Tertiary structure prediction of RNA assembling 2D-based segment structures.
Abstract
　　
10:50-11:00 【Coffee Break】
　　
13:00-14:00 【Lunch】Supported by Filgen, Inc.
　　
14:00-15:00 【Invited Speech】
Prof. Nir Friedman(The Hebrew University of Jerusalem)
Title:　DE NOVO ASSEMBLY OF RNASEQ FOR TRANSCRIPTOME RECONSTRUCTION AND CHARACTERIZATION
Abstract
　　
15:00-15:15 【Coffee Break】
　　
15:15-15:40 【Talk Session②】Information science & Sequence analysis
Paul Horton(Team Leader, Sequence Analysis Team)
ミトコンドリア
Title:　MITOCHONDRIA
Abstract
　　
15:40-16:05 【Talk Session②】Information science & Sequence analysis
Koji Tsuda(Group Leader, Machine Learning Research Group)
Title:　REACTION GRAPH KERNELS FOR ANALYZING METABOLIC NETWORKS
Abstract
　　
16:05-16:30 【Talk Session②】Information science & Sequence analysis
Kazutaka Katoh(Invited Senior Research Scientist, RNA Informatics Team)
Title:　TWO EXTENSIONS OF MAFFT: PROTEIN STRUCTURE-SEQUENCE ALIGNMENT AND LARGE-SCALE SEQUENCE ALIGNMENT
Abstract
　　
18:00-19:00 【Poster session 1】Odd numbers
【Software Exhibition 1】
　　
19:00- 【BiWO2010 Reception】
Supported by HPC sollutions

July 29

9:00-10:00 【Invited Speech】
Dr. Hiroki R. Ueda(RIKEN)
Title:　SYSTEMS BIOLOGY OF BIOLOGICAL TIMINGS.
Abstract
　　
10:00-10:25 【Talk Session③】Cellular system
Sachiyo Aburatani(Research Scientist, Cell Function Design Team)
Title:　Inferring the Transcriptional Interactions between Genes and Proteins by Structural Equation Modeling
Abstract
　　
10:25-10:50 【Talk Session③】Cellular system
Masahiko Nakatsui(AIST Research Staff, Biological Network Team)
Title:　HIGH ACCURACY PARAMETER ESTIMATION BY INTRODUCING SYMBOLIC COMPUTATION TECHNIQUES.
記号計算手法の導入による高精度パラメータ推定
Abstract
　　
10:50-11:00 【Coffee Break】
　　
13:00-13:55 【Lunch】Supported by IMS lab.
　　
18:00-19:00 【Poster session 2】Even numbers
【Software Exhibition 2】
　　
19:00- 【BiWO2010 Banquet】
Supported by Mitsubishi Research Institute

July 30

9:00-10:40 【Invited Lecture】
Dr. David Landsman(NCBI, NLM, NIH)
Title:　EXTRACTING MEANINGFUL INFORMATION FROM DATA FLOODS.
Abstract
　　
10:40-11:00 【Coffee Break】
　　
11:00-12:00 【Software Demonstration session】
  • Tamotsu Noguchi
    Title:　ESPRESSO: a sequence-based predictor for estimating protein expression and solubility
    タンパク質発現・可溶性予測法
    Abstract

  • Makiko Suwa
    Title:　SEVENS: The integrated database of seven transmemebrane helix proteins identified from eukaryote genomes.
    SEVENS: 真核生物ゲノムから予測した7 回膜貫通ヘリックス型タンパク質の統合データベース
    Abstract

  • Kazutaka Katoh
    Title:　MAFFT ONLINE SEQUENCE ALIGNMENT SERVICE
    Abstract

  • Toutai Mituyama
    Title:　GIGANT: AN AUTOMATED ANNOTATION SYSTEM FOR MASSIVELY PARARELL SEQUENCERS
    Abstract

  • Toshiyuki Tashiro
    Title:　LIFE SCIENCE DATABASE INTEGRATION PROJECT, WORKFLOWS
    Abstract

  • Tomoko Terada
    Title:　THE ACTIVITY OF BIOINFORMATICS TRAINING CONSORTIUM
    生命情報科学人材養成コンソーシアムの活動
    Abstract

  • Chisato Yamasaki
    Title:　H-InvDB: A COMPLEHENSIVE ANNOTATION RESOURCE FOR HUMAN TRANSCRIPTOME.
    H-InvDB:ヒト遺伝子統合アノテーションデータベース
    Abstract

  • Akihiro Matsuya
    Title:　MEDALS: METI Database portal for Life Science
    経産省ライフサイエンス統合データベースプロジェクト・ポータルサイト ＭＥＤＡＬＳ
    Abstract

  • Ayumi Koso(DBCLS)
    Title:　INTEGRATING LIFE SCIENCE DATABASES IN JAPAN - WHAT IS AVAILABLE AT THE LSDB HOME PAGE?
    Abstract
    		•
    　　
    12:00-12:25 【Talk Session④】Database and Others
    Nozomi Nagano(Senior Research Scientist, Biomolecular Systems Research Group)
    Title:　METRIC LEARNING BASED ACTIVE-SITE PREDICTION FOR ENZYME PROTEINS
    Abstract
    　　
    12:25-12:50 【Talk Session④】Database and Others
    Daisuke Tominaga(Research Scientist, Cell function design team)
    Title:　FOURIER BASED PERIODICITY DETECTION METHOD FOR SHORT LENGTH TIME SERIES DATA
    短データ長時系列データに適したフーリエ変換に基づく周期性検出法
    Abstract
    　　
    12:50-13:00 【Poster award】
    　　
    13:00-13:55 【Lunch】Supported by Illumina, Inc.
    　　
    14:00-14:30 【Special Session】Next-gen Sequencing Analysis and Applications Tetsuro Hirose(Biomedical Information Research Center, AIST)
    Title:　Emerging roles of long noncoding RNAs in gene expression and intracellular organization
    Abstract
    　　
    14:30-15:15 【Special Session】Next-gen Sequencing Analysis and Applications Penmetcha Kumar(Biomedical Research Institute, AIST)
    Title:　Viroids as a molecular tool to understand the RNA trafficking in plants
    Abstract
    　　
    15:15-15:45 【Special Session】Next-gen Sequencing Analysis and Applications Martin Frith(Research Scientist, Sequence Analysis Team)
    Title:　What's wrong with homology search and how to fix it
    Abstract
    　　
    15:45-16:00 【Coffee Break】
    　　
    16:00-16:30 【Special Session】Next-gen Sequencing Analysis and Applications Jean-Francois Pessiot(AIST Research Staff, Cell Function Design Team)
    Title:　PeakRegressor identifies composite sequence motifs responsible for STAT1 binding sites
    Abstract
    　　
    16:30-17:00 【Special Session】Next-gen Sequencing Analysis and Applications Edward Wijaya(The University of Tokyo)
    Title:　RECOUNT: counting sequences with sequencing error
    Abstract
    　　
    17:00- 【Closing remarks】
    　　
    19:00-21:00 【Excursion】
    Tokyo Bay Summer Cruising