Program


[Jan. 24 ]Memorial Symposium to Celebrate the 10th Anniversary of CBRC
[Jan. 25 ]Protein subcellular localization and related topics
[Jan. 26 ]CBRC2011 & Next-Generation Sequencer
[Jan. 27 ]CBRC2011 & JSBi-SIG on Pharma-Infomatics
[Jan. 27 ]Introduction of Symbolic Computation

January 24

14:00-18:15 【Memorial Symposium to Celebrate the 10th Anniversary of CBRC】

18:15-20:00 【BiWO2011 Reception】Supported by HPC sollutions

January 25

9:45-12:00 【JST, Japan-Sweden Research Cooperation; Protein subcellular localization and related topics】

12:00-13:30 【Luncheon Seminar】 Mitsubishi Space Software Co., Ltd.

13:30-17:00 【JST, Japan-Sweden Research Cooperation; Protein subcellular localization and related topics】

17:00-19:00 【CBRC2011】
Poster session & Software Demonstration 1 Odd numbers

January 26

10:00-10:20 【CBRC2011】
Martin C. Frith(Sequence Analysis Team, CBRC)
Title:Accurate large-scale sequence comparison
Abstract

10:20-10:40 【CBRC2011】
Edward Wijaya(The University of Tokyo)
Title:RecountDB: a database of mapped and count corrected transcribed sequences.
Abstract

10:40-11:00 【CBRC2011】
Hiroki Ashida(The University of Tokyo)
Title:Shape-based Alignment of Genomic Landscapes in Multi-scale Resolution
Abstract

11:00-12:00 【HPCI Workshop】Beyond the Next-generation Sequencer Data Ken Kurokawa(Department of Biological Information, Tokyo Institute of Technology)
Title:Development of an integrated analysis system for metagenomics and its applications for soilmetagenome analysis
Abstract

12:00-13:30 【Luncheon Seminar】Life Technologies Japan Ltd.

13:30-14:30 【HPCI Workshop】Beyond the Next-generation Sequencer Data Masayuki Machida(Bioproduction Research Institute, AIST, Department of Biotechnology and Life Science, Tokyo University of Agriculture and Technology )
Title:BioCAD - Toward enhancement of R&D performance ?
Abstract

15:00-16:00 【HPCI Workshop】Beyond the Next-generation Sequencer Data Hiroyuki Sasaki(Division of Epigenomics, Department of Molecular Genetics, Medical Institute of Bioregulation, and Epigenome Network Research Center, Kyushu University)
Title:The regulatory network of small RNAs and DNA methylation in mouse germ cells revealed by high-throughput sequencing combined with genetic studies
Abstract

16:00-17:00 【HPCI Workshop】Beyond the Next-generation Sequencer Data Carsten Daub(RIKEN)
Title:Transcriptional regulation of adipogenesis is perturbed in obesity
Abstract

17:00-19:00 【CBRC2011】
Poster session & Software Demonstration 2 Even numbers

January 27

10:00-10:20 【CBRC2011】
Wataru Fujibuchi(Cell Function Design Team Leader, CBRC)
Title:Towards iPS cell drug discovery: prediction of chemical toxicity based on gene network learning
Abstract

10:20-10:40 【CBRC2011】
Tomoshi Kameda(Molecular Modeling ＆ Drug Design Team, CBRC)
Title:Arginine-Assisted Solubilization System for Drug Substances:Solubility Experiment and Simulation
Abstract

10:40-11:00 【CBRC2011】
Kana Shimizu(RNA Informatics Team, CBRC)
Title:Developing novel protocol for privacy-preserving search of bit-vectors and its application to the chemical compounds library search
Abstract

11:00-12:00 【Invited Speech】
Prof. Bruno Buchberger(Johannes Kepler University Linz, Austria)
Title:Symbolic Computation and RISC(Research Institute for Symbolic Computation)
Abstract

12:00-13:30 【Luncheon Seminar】Fujitsu Kyushu Systems Ltd.

13:30-14:10 【JSBi-SIG on Pharma-Infomatics】
Hiroaki Suga(The University of Tokyo)
Title:Genetic code reprogramming: Its concept and applications
Abstract

14:10-14:50 【JSBi-SIG on Pharma-Infomatics】
藤井 郁雄(大阪府立大学大学院　理学系研究科)
Title:次世代抗体医薬：立体構造規制ペプチド・ライブラリーによる分子標的ペプチド（マイクロ抗体）の創出
Abstract

14:50-15:10 【Coffee Break】

15:10-15:50 【JSBi-SIG on Pharma-Infomatics】
上杉 志成(京都大学物質−細胞統合システム拠点/化学研究所)
Title:細胞治療を助ける化合物
Abstract

15:50-16:20 【JSBi-SIG on Pharma-Infomatics】
広川 貴次(CBRC 創薬分子設計チーム　研究チーム長)
Title:タンパク質間相互作用制御化合物のインシリコスクリーニングへの取り組み
Abstract

16:30-17:00 【CBRC2011 】Poster award Closing remarks

January 27 PM
8F Collaboration Corner

13:40-14:05
8F 		【CBRC2011】Introduction of Symbolic Computation: Toward its Application to Biological Sciences
Yosuke Sato(Tokyo Univ. of Science)
Title:Why we need and how we compute parametric Groebner Bases
Abstract

14:05-14:30
8F 		【CBRC2011】Introduction of Symbolic Computation: Toward its Application to Biological Sciences
Xavier Dahan(Kyushu University)
Title:On lexicographic Groebner bases in dimension zero
Abstract

14:30-14:55
8F 		【CBRC2011】Introduction of Symbolic Computation: Toward its Application to Biological Sciences
Hidefumi Ohsugi(Rikkyo Univ. / JST CREST)
Title:Grobner bases of toric ideals of nested configurations arising in algebraic
Abstract

14:55-15:05 【Coffee Break】

15:05-15:30
8F 		【CBRC2011】Introduction of Symbolic Computation: Toward its Application to Biological Sciences
Masaaki Kanno(Niigata University)
Title:Parametric Optimal Control Design
Abstract

15:30-15:55
8F 		【CBRC2011】Introduction of Symbolic Computation: Toward its Application to Biological Sciences
Hidenao Iwane(Fujitsu Laboratories Ltd.)
Title:A symbolic-numeric approach to polynomial optimization problems
Abstract

15:55-16:20
8F 		【CBRC2011】Introduction of Symbolic Computation: Toward its Application to Biological Sciences
Katsuhisa Horimoto(CBRC)
Title:Application of symbolic computation to systems biology - A constraint for optimal parameter estimation
Abstract