Computational Biology Research Center[CBRC]
Advanced Industrial Science and Technology[AIST]
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Staff List
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| Key word | Team/Responsibility | ||||
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Gene regulatory network, Graphical models | Cell Function Design |  |
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| Sachiyo Aburatani | Research Scientist |  |
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| metabolomics, metabolism, database, network | - |  |
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| Masanori Arita | Invited Senior Research Scientist | ||||
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Genome Information Analysis, Comparative Genomics, Functional RNA,Non-coding RNA, Stochastic Model, Sequence Analysis, Secondary Structure of RNA | - |  |
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| Kiyoshi Asai | Director | ||||
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| Key word | Team/Responsibility | ||||
| FPGA-accelerated sequence alignment, primer design, promoter analysis, gene expression data analysis | Cell Function Design |  |
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| Hirokazu Chiba | Technical Staff | ||||
| annotation, enzyme, database | Biomolecular Systems |  |
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| Yuko Chujo | Technical Staff | ||||
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| Key word | Team/Responsibility | ||||
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genome evolution, motifs, genome function,alignment | Sequence Analysis |  |
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| Martin Frith | Research Scientist | ||||
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cell state-space analysis, large-scale gene expression data mining, microarray standardization, speed-up of bio-calculation by accelerator | Cell Function Design |  |
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| Wataru Fujibuchi | Leader | ||||
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Pathway informatics, Pathway database, Ontology, Semantic Web, Knowledge Representation, Logic, BioPAX, OBO (Open Biomedical Ontologies) | Biological Network |  |
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| Kenichiro Fukuda | Research Scientist |  |
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Molecular Simulation, Saccharides, GRID, HPC, Protein Interaction, Fragmentation Mechanism, LASER, Photo-induced¡¡reaction | Molecular Function |  |
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| Kazuhiko Fukui | Leader |  |
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| Key word | Team/Responsibility | ||||
| sequence analysis, sequence alignment, gene finding, comparative genomics, gene evolution, cytochrome P450 | - |  |
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| Osamu Gotoh | Invited Senior Research Scientist |  |
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Membrane and Globular Proteins: analysis, prediction, folding, stability, interactions, database and algorithms | Molecular Function |  |
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| Michael¡¡Gromiha | Senior Research Scientist | ||||
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| Key word | Team/Responsibility | ||||
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protein modeling, in silico screening, drug design, molecular simulation, G protein-coupled receptors | Molecular Modeling ¡õ Drug Design |  |
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| Takatsugu Hirokawa | Leader |  |
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Statistical inference for association and causality, Algebraic computation | Biological Network |  |
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| Katsuhisa Horimoto | Leader |  |
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Genome Sequence Analysis,Protein localization prediction, Motif Discovery, Gene Expression Analysis | Sequence Analysis |  |
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| Paul Horton | Leader | ||||
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| Key word | Team/Responsibility | ||||
| protein-protein interaction, molecular evolution | Biomolecular Systems |  |
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| Hisako Ichihara | AIST Research Staff | ||||
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| Key word | Team/Responsibility | ||||
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molecular dynamics, replica exchange method, protein folding, amyloid and aggregation | Molecular Modeling ¡õ Drug Design |  |
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| Tomoshi Kameda | Research Scientist | ||||
| Sequence alignment, Molecular evolution, Molecular phylogenetic analysis | RNA Informatics |  |
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| Kazutaka Katoh | Invited Senior Research Scientist |
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| Key word | Team/Responsibility | ||||
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database,microarray,noncoding,microRNA,giga sequencer | RNA Informatics |  |
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| Toutai Mituyama | Leader | ||||
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time series analysis, network modeling, visualization | Machine Learning |  |
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| Ryoko Morioka | AIST Research Staff | ||||
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molecular dynamics protein stability, folding, tertiary structure prediction | Molecular Modeling ¡õ Drug Design |  |
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| Chie Motono | Research Scientist | ||||
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| Key word | Team/Responsibility | ||||
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enzyme, enzyme reaction, protein structure and function | Biomolecular Systems |  |
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| Nozomi Nagano | Senior Research Scientist |  |
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Systems biology, Symbolic computation, Gene regulatory networks, Time-series analysis, Numerical optimization | Biological Network |  |
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| Masahiko Nakatsui | AIST Research Staff | ||||
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protein function, protein-protein interaction, drug design, globular and membrane proteins, GPCRs | Molecular Function |  |
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| Wataru Nemoto | AIST Research Staff | ||||
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Protein, Structute, Function, Binding site, Disorder | - |  |
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| Tamotsu Noguchi | Principal Research Scientist |  |
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| Key word | Team/Responsibility | ||||
| annotation, enzyme, database | Biomolecular Systems |  |
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| Fumi Osawa | Technical Staff | ||||
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| Key word | Team/Responsibility | ||||
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machine learning, gene regulatory networks prediction, gene expression data analysis, cell differentiation | Cell Function Design |  |
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| Jean-Francois Kenichi Pessiot | AIST Research Staff | ||||
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| Key word | Team/Responsibility | ||||
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subcellular localization of proteins, mitochondrial outer membrane proteins, perimitochondrial localizing mRNA | Sequence Analysis |  |
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| Noriyuki Sakiyama | AIST Research Scientist | ||||
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Protein, Protein Structure, Disorder | RNA Informatics |  |
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| Kana Shimizu | Research Scientist | ||||
| G-protein-coupled receptors (GPCRs), Rhodopsin, Sequence analysis, Molecular dynamics, QM/MM, Quantum chemistry | - |  |
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| Minoru Sugihara | Technical Staff | ||||
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Protein function prediction, membrane protein, G-protein coupling receptor,Comparative genome analysis | - |  |
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| Makiko Suwa | Principal Research Scientist |  |
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| Key word | Team/Responsibility | ||||
| workflow, pipeline, distributed processing, parallel processing | Molecular Function |  |
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| Toshiyuki Tashiro | Technical Staff | ||||
| Bioinformatics Training Consortium | - |  |
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| Tomoko Terada | Technical Staff | ||||
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protein,¡¡amino acid sequence, ¡¡nucleotide sequence, tertiary structure, protein-protein interaction, homology, molecular evolution | - |  |
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| Hiroyuki Toh | Depity Director | ||||
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protein structure prediction, profile-profile alignment,FORTE,sequence alignment | Sequence Analysis |  |
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| Kentaro Tomii | Senior Research Scientist |  |
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Systems biology, Time series analysis, Symbolic computation, Numerical optimization, Gene regulatory networks, S-system, Periodicity judgment | Cell Function Design |  |
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| Daisuke Tominaga | Research Scientist |  |
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Machine learning, Kernel methods, Protein networks, Structured data | Machine Learning |  |
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| Koji Tsuda | Senior Research Scientist |  |
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| Key word | Team/Responsibility | ||||
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electron microscopy, single particle analysis,molecular graphics, scripting language, fiber diffraction,protein interactions | - |  |
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| Yutaka Ueno | Senior Research Scientist | ||||
| Molecular Function |  |
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| Shogo Ushiyama | Technical Staff | ||||
| £Ù | |||||
| Key word | Team/Responsibility | ||||
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Protein - DNA/RNA interaction, DNA/RNA folding, molecular dynamics simulation | Molecular Function |  |
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| Satoshi Yamasaki | AIST Research Staff | ||||
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