Computational Biology Research Center[CBRC]
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- ขฃIntegrated System
- ขฃGenome Analysis
- ขฃCellular System Analysis
- ขฃProtein Structure/Function Prediction
Workflow |
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| Life Science DB Integration Web | |
| http://togo.cbrc.jp/en_index.html |
ALN |
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| Pairwise alignment of biological sequences supporting spliced alignment procedures | |
| http://www.cbrc.jp/ALN/ |
CentroidFold |
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| RNA secondary structure prediction software | |
| http://www.ncrna.org/centroidfold/ |
fastapl, fastqpl |
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| FASTA Perl Loop, a tool for processing multifasta data, and its companion program fastqpl for fastq format data. | |
| http://seq.cbrc.jp/fastapl/index.html.en |
GUPPY |
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| A program to visualize sequence annotation data of the genetic sequence data with graphical layout | |
| http://www.cbrc.jp/GUPPY/ |
LAST |
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| Genome-Scale Sequence Comparison | |
| http://last.cbrc.jp/ |
MAFFT |
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| Multiple sequence alignment program | |
| http://mafft.cbrc.jp/alignment/software/ |
Murlet |
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| a multiple alignment tool for structural RNA sequences. | |
| http://murlet.ncrna.org/ |
paraclu |
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| Find clusters in data attached to sequences. | |
| http://www.cbrc.jp/paraclu/ |
Recount |
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| Software for correcting tag counts biased from Next-gen sequencer misreads | |
| http://seq.cbrc.jp/recount/ |
Rfold |
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| Rfold computes local base pairing probabilities for long DNA sequences | |
| http://www.ncrna.org/ software/rfold/ |
seg-suite |
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| Tools for manipulating segments and alignments. | |
| http://www.cbrc.jp/seg-suite/ |
tantan |
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| Find cryptic repeats in DNA, RNA, and protein sequences. | |
| http://www.cbrc.jp/tantan/ |
ASIAN |
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| Network inference tool by the combination of hierarchical clustering and graphical Gaussian modeling (GGM) | |
| http://eureka.cbrc.jp/asian/ |
CellMontage |
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| A gene expression databases searching system for cells-type analysis | |
| http://cellmontage.cbrc.jp/ |
SAMURAI |
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| A program for fast and exhaustive enumeration of gene modules | |
| http://samurai.cbrc.jp/ |
SGCAL |
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| Structural glycomics calculation | |
| http://sgcal.cbrc.jp/ |
CoCoozo |
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| Parallel high-speed engine for peptide MS / MS ions search | |
| http://www.cbrc.jp/cocoozo/ |
FORTE |
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| An algorithm used to accurately align a target protein profile against a protein profile of known structure | |
| http://www.cbrc.jp/forte/ |
GRIFFIN |
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| A system for predicting GPCR-G-protein coupling selectivity using SVM and HMM | |
| http://griffin.cbrc.jp/ |
GRIP |
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| Interface Prediction for GPCR Oligomerization | |
| http://grip.cbrc.jp/GRIP/ |
PAPIA |
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| Parallel protein information analysis system | |
| http://mbs.cbrc.jp/papia/ |
POODLE |
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| Prediction of order and disorder by machine learning | |
| http://mbs.cbrc.jp/poodle/ |
TMBETA-NET |
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| A program to predict beta strand type membrane proteins from amino acid sequence | |
| http://psfs.cbrc.jp/tmbeta-net/ |
WoLF PSORT |
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| Software to predict sub-cellular localization sites of proteins based on their amino acid sequences | |
| http://wolfpsort.org |
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