Computational Biology Research Center[CBRC]

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• Papers（Recent Publication）

Papers（Recent Publication）

• Wan Raymond; "Efficient Probabilistic Latent Semantic Analysis Through Parallelization", Proc. 5th Asia Information Retrieval Symposium, doi:10.1007/978-3-642-04769-5_38, (2009).
  ■Abstract on the Journal Website.
• Shimizu, K., Toh, H.; "Interaction between intrinsically disordered proteins frequently occurs in a human protein-protein interaction network", Journal of Molecular Biology, 392(5), pp.1253-1265(2009).
  ■PubMed
• Sato, K., Hamada, M., Mituyama, T., Asai, K., Sakakibara, Y.; "A non-parametric Bayesian approach for predicting RNA secondary structures", Lecture Notes in Bioinformatics, 5724, pp.286-297(2009).
  ■Abstract on the Journal Website.
• Saito, K., Inagaki, S., Mitsuyama, T., Kawamura, Y., Ono, K., Sakota, E., Kotani, H., Asai, K., Shiomi, H., Shiomi, M.; "A regulatory circuit for piwi by the large Maf gene traffic jam in Drosophila", Nature, doi:10.1083/nature08501,(2009).
  ■Full Text Paper(PDF) on the Journal Website.
• Koga, N., Kameda, T., Okazaki, K., Takada, S.; "Paddling mechanism for the substrate translocation by AAA+ motor revealed by multiscale molecular simulations", Proceedings of the National Academy of Sciences of the United States of America, (2009).
  ■Abstract on the Journal Website.
• Fujibuchi, W., Chiba, H., Akiyama, H., Shiku, H.; "Designing Pyro-Primer Sequences Using a Simulated Annealing Algorithm, to Critically Target mRNAs in Quantitative Cell Analysis", Progress on Post-genome Technologies -Proceedings of the 6'th International Forum on Post-genome Technologies, pp.253-257(2009).
• Nakatsui, M., Horimoto, K.; "Parameter Optimization in the network dynamics including unmeasured variables by the symbolic-numeric approach.", Proceedings of the Third International Symposium on Optimization and Systems Biology (OSB'09), pp.245-253(2009).
  ■Full Text Paper(PDF)
• Gromiha, M.M., Yokota, K., Fukui, K.; "Identification and analysis of binding site residues in protein-protein complexes", Proc. World Academy of Sciene and Technology, 57, pp.127-132(2009).
• Horton, P.; "A Tiling Bound for Pairwise Global Sequence Alignment", Communications in Computer and Information Science 30, pp.93-98(2009).
  ■Abstract on the Journal Website.
  ■Full Text Paper(PDF)
• Koshimizu, H., Kiyosue, K., Hara, T., Hazama, S., Suzuki, S., Uegaki, K., Nagappan, G., Zaitsev, E., Hirokawa, T., Tatsu, Y., Ogura, A., Lu, B., Kojima, M.; "Multiple functions of precursor BDNF to CNS neurons: negative regulation of neurite growth, spine formation and cell survival", Molecular Brain, ISSN1756-6606(2009).
  ■PubMed
• Huang, LT., Gromiha, M.M..; "Reliable Prediction of Protein Thermostability Change upon Double Mutation from Amino Acid Sequence", Bioinformatics, 25(17), pp.2181-2187(2009).
  ■PubMed
• Kawajiri, K., Kobayashi, Y., Ohtake, F., Ikuta, T., Matsushima, Y., Mimura, J., Pettersson. S., Pollenz, RS., Sakaki, T., Hirokawa, T., Akiyama, T., Kurosumi, M., Poellinger, L., Kato, S., Fujii-Kuriyama, Y.; "Aryl hydrocarbon receptor suppresses intestinal carcinogenesis in ApcMin/+ mice with natural ligands", Proceedings of the National Academy of Sciences of the United States of America, 106(32), pp.13481-13486(2009).
  ■Abstract on the Journal Website.
• Yoshida T, Kadota Y, Hitaoka S, Kori E, Horikawa Y, Taguchi M, Tsuji D, Hirokawa T, Chuman H, Itoh K.; "Expression and molecular dynamics studies on effect of amino acid substitutions at Arg344 in human cathepsin A on the protein local conformation.", Biochimica et Biophysica Acta - Proteins and Proteomics, 1794(11), pp.1693-1699(2009).■PubMed

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