Protein Structure Similarity Search
for amino acid sequence exact match
This submenu (amino acid sequence exact match) is not a structural search
but a sequential search in actual. Query sequence is compared with
sequences in PDB-REPRDB structure database, and matched 'structures' are
reported. A user can observe matched sequence fragments on a structure
viewer. Only 'exactly' matched sequences (structures) are reported.
How to use :
See 'Service status'
and confirm the service is ON.
You can only select PDB-REPRDB ( representative chain from PDB ) at the moment.
Set 'Max. Output Number'.
The output will be truncated by this number.
Maximum number is 300.
Enter any label for your query
into'Query label=' field.
Enter your sequence into 'Input amino acid sequence(> 3a.a.)' text area.
Maximum length is 2,000 a.a.
Push 'Service status' button to confirm the service status for your query.
Push 'Reset this form' only if you want to reset the input form.
Then, push 'Submit' button
to submit your query to the server.