PDB-REPRDB ( based on PDB Rel.#2004_06_20 )
(Last updated: July 9,2004)

A Database of Representative Protein Chains from PDB (Protein Data Bank)

(see the document.)

Since 01/Apr/98

PDB-REPRDB Selection Criterion

Constraints to eliminate and arrange chains are here.
Each representative is different from all other representatives in terms of either
a ) Sequence similarity (ID% =< threshold1)

ID%:
Percentage of identical amino-acid residues between corresponding residue pairs in the two compared sequences.
OR
b ) 3-dimensional structures similarity (Dmax >= threshold2)

Dmax:
Maximum 'Ca'-distance between the corresponding residue pairs in the two compared structures.

Threshold sequence identity ID%	Number of chains
	Dmax (A)
	>= 10	>= 30	>= 50	infinity
=< 30	5736	3896	3724	3696
=< 50	6359	5346	5247	5230
=< 70	7093	6254	6166	6148
=< 90	8321	7619	7546	7535

This table and representative chains were last updated at: 9 July 2004