FY 1999 (Apr.1999-Mar.2000)
FY 1999 (Apr.1999-Mar.2000)
Kiyotaka Misoo, Yoshihisa Shizawa,Yutaka Akiyama,Minoru Saito: "Development of Molecular Dynamics Programs for Proteins with a Parallelized Barnes-Hut Tree Code", Transactions of IPSJ, Vol. 41, No. 5, pp.1538-1548 (2000). [in Japanese] [D-99-111]
Tamotsu Noguchi, Kentaro Onizuka, Makoto Ando, Hideo Matsuda and Yutaka Akiyama: "Quick Selection of Representative Protein Chain Sets Based on CustomizableRequirements", Bioinformatics , Vol.16, pp.520-526 (2000). [D-99-135]
Kiyotaka Misoo, Yutaka Akiyama, Yoshihisa Shizawa and Minoru Saito: "Development of Molecular Dynamics Programs for Protein with a Parallelized Barnes-Hut Code", Proc. of the Fourth International Conference on High-Performance Computing in Asia-Pacific Region (HPC-Asia 2000), Vol.2, pp.1103-1111 (2000). [D-99-164]
Makoto Ando, Yutaka Akiyama and Hideo Matsuda:
"ESCAPE 2.0: Parallel Exhaustive Conformational Search System of
Peptides with Conformational Libraries as Building Blocks",
Proc. of the Fourth International Conference on High-Performance
Computing in Asia-Pacific Region (HPC-Asia 2000), Vol.2, pp.1097-1102 (2000).
[D-99-165]
Yutaka Akiyama: "Protein Information Analysis on Parallel Computers", Journal of Japanese Society for Artificial Intelligence, Vol.15, No.1, pp.27-34 (2000). [D-99-166]
Yutaka Akiyama, Tamotsu Noguchi, Kentaro Onizuka and Makoto Ando: "A Compact 8-node Linux PC Cluster for Protein Information Analysis", Proc. of the fifth Int. Symp. on Artificial Life and Robotics (AROB 5th '00), pp.729-732 (2000). [D-99-185]
Paul Horton:
"Tsukuba BB: A Branch and Bound Algorithm for Local Multiple Sequence
Alignment", Proc. of the 11th Annual Symposium on Combinatorial Pattern Matching , Springer-Verlag (2000). (in press)
[D-99-229]
Toshiyuki Sato, Yutaka Akiyama, Tatsuya Nakano, Uebayasi Masami, Kitaura Kazuo: "Parallelization and Performance Evaluation of Fragment Molecular Orbital method program ABINIT-MP", IPSJ Transactions on High Performance Computing Systems, HPS-1-19 (2000). [to appear] [D-99-230]
Tatsuya Nakano, Tsuguchika Kaminuma, Toshiyuki Sato, Yutaka Akiyama, Masami Uebayashi, Kazuo Kitaura: "Fragment molecular orbital method: application to polypeptides", Chemical Physics Letters Vol.318, pp.614-618 (2000). [D-99-247]
Joerg Nolte and Paul Horton: "Parallel Maching and Sorting with TACO's Distributed Collections - A Case Study from Molecular Biology Research", Proc. of the Ninth IEEE International Symposium on High Performance Distributed Computing (2000). [to appear] []
Tomoya Hirao, Takamichi Mizuhara, Tetsuya Saito, Makoto Ando, Yutaka Akiyama, Kazuki Joe, Yoshitoshi Kunieda: "Protein View: a Highlly Interactive Visualization System for Protein Structure Analysis", IPSJ SIG Notes, 99-HPC-27 (SWoPP'99), pp.125-130 (1999). [in Japanese] [D-99-077]
Yutaka Akiyama: "Bioinformatics", IPSJ Magazine Vol 40, No.11, pp.1136-1138 (1999). [D-99-137]
Paul Horton: "Alignment vs. Sum of All Alignments Scoring for Motif Extraction", RWC Technical Report, 2000. [D-99-178]
Yutaka Akiyama, Tamotsu Noguchi, Kentaro Onizuka, Paul Horton and Makoto Ando: "Parallel Protein Information Analysis System and Parallel No-Cutoff Molecular Dynamics Simulation on a Compact 8-node Linux PC Cluster", Proc. of the RWC2000 (2000). [D-99-184]
Paul Horton:
"Alignment vs. Sum of All Alignments Scoring for Motif Extraction",
IPSJ Symposium Series Vol.2000, No.5, pp.231-238 (2000).
[D-99-228]
Makoto Ando, Yutaka Akiyama and Hideo Matsuda:
"A Hierarchical Approach to Parallel Tree Search-based
Protein Conformational Analysis",
IPSJ Symposium Series Vol.2000, No.5, pp.141-148 (2000) [D-99-231]
Paul Horton: "On the Complexity of Some Local Multiple Sequence Alignment Problems", RWC Technical Report (RWC TR-990001)(1999). [TR-990001]
Kentaro Onizuka, Tamotsu Noguchi and Yutaka Akiyama: "The Mini-threading by Multi-dimensional Mean Force Potentials", The Seventh International Conference on Intelligent Systems for Molecular Biology (1999). [D-99-061]
Paul Horton: "A New Heuristic for Local Multiple Sequence Alignment", The Seventh International Conference on Intelligent Systems for Molecular Biology (1999). [D-99-062]
Tamotsu Noguchi, Kentaro Onizuka and Yutaka Akiyama: "PDB-REPRDB: An Interactive Database of Representative Protein Chains from the Protein Data Bank(PDB)", The Seventh International Conference on Intelligent Systems for Molecular Biology (1999). [D-99-063]
Yutaka Akiyama, Kentaro Onizuka, Tamotsu Noguchi, and Makoto Ando: "Development of the PAPIA system on a large-scale PC cluster", The 180th meeting on Chemistry, Biology, and Informatics (1999). [D-99-064]
Yutaka Akiyama, Kentaro Onizuka, Tamotsu Noguchi, Paul Horton, and Makoto Ando: "RWCP High-Performance Computing for Structural Biology", The 7th meeting of Software Infrastructure Forum (1999). [D-99-081]
Tomoya Hirao, Takamichi Mizuhara, Tetsuya Saito, Makoto Ando, Yutaka Akiyama, Kazuki Joe, Yoshitoshi Kunieda: "Protein Structure Visualizing System, Protein View", Proc. of the 16th Annual Meeting of JSSST, pp.69-72 (1999). [D-99-130]
Yutaka Akiyama, Tamotsu Noguchi, Kentaro Onizuka and Makoto Ando: "PAPIA (Parallel Protein Information Analysis) System and MolTreC Parallel Molecular Dynamics Simulator Running on a Compact 8-node Linux PC Cluster", The 10th Genome Informatics Workshop, pp.202-203 (1999). [D-99-141]
Paul Horton: "Tsukuba BB: An alignment for finding short motifs", Japanese Society for Artificial Intelligence, SIG-MBI (2000). [D-99-141]
Tatsuya Nakano, Tsuguchika Kaminuma, Masami Uebayasi, Toshiyuki Sato, Yutaka Akiyama, Kazuo Kitaura: "Pair interaction molecular orbital method: an approximate computational method for large molecules", Molecular structure total conference (1999). []
Tatsuya Nakano, Tsuguchika Kaminuma, Masami Uebayasi, Toshiyuki Sato, Yutaka Akiyama, Kazuo Kitaura: "Pair interaction molecular orbital method program ABINIT-MP", The 180th CBI research lecture meeting (1999). []
Tatsuya Nakano, Tsuguchika Kaminuma, Masami Uebayasi, Toshiyuki Sato, Yutaka Akiyama, Kazuo Kitaura: "Pair interaction molecular orbital method: an approximate computational method for molecular interactions", Computational chemistry conference, (1999). []
FY 1998 (Apr.98-Mar.99)
Yutaka Akiyama, Kentaro Onizuka, Tamotsu Noguchi, and Makoto Ando: "Parallel Protein Information Analysis (PAPIA) system running on a 64-node PC Cluster", Proc. of the 9th Genome Informatics Workshop , pp.131-140(1998). [D-98-088]
Makoto Ando, Yutaka Akiyama, Kentaro Onizuka, and Tamotsu Noguchi:
"Parallel Tree Search-based Protein Conformation Analysis System
Implemented on a Massively Parallel Computer", Transactions of IPSJ,
Vol.40, No.SIG2 (TOM1), pp.91-104 (1999). [in Japanese]
[D-98-102]
Tamotsu Noguchi, Yutaka Akiyama, Kentaro Onizuka, and Makoto Ando: "The classification of protein structures based on the sequential and structural similarity, and the database of representative protein chains (PDB-REPRDB)", Transactions of IPSJ, Vol.40, No.SIG2 (TOM1), pp.117-128 (1999). [in Japanese] [D-98-103]
Yasushi Totoki, Yutaka Akiyama, Kentaro Onizuka, Tamotsu Noguchi, Minoru Saito, and Makoto Ando:
"Multiple Protein Sequence Alignment using Parallel Iterative
Algorithm and A* Algorithm",Transactions of IPSJ, Vol.40,
No.SIG9 (TOM2), pp.138-149 (1999). [in Japanese]
[D-98-128]
Kentaro Onizuka, Tamotsu Noguchi, Makoto Ando, and Yutaka Akiyama:
"A compressed representation of multiple-dimensional distribution by
linear base-transformation, and its application to the residue-pair relative
distribution of proteins",
Transactions of IPSJ, Vol.40, No.SIG2 (TOM1), pp.105-116 (1999). [in Japanese]
[D-98-135]
Kiyotaka Misoo, Yoshihisa Shizawa, Yutaka Akiyama, and Minoru Saito:
"Development of Molecular Dynamics Programs for Proteins with
Parallelized Barnes-Hut Tree Code", Proc. of the Joint Symposium on Parallel Processing 1999 (JSPP'99), pp.143-150 (1999). [in Japanese]
[D-98-148]
Yutaka Akiyama: "Improvement of the Back-propagation Learning Rule by Introducing an Entropy Term", Transactions of IPSJ, Vol.40, No.SIG9 (TOM2), pp.81-90 (1999). [in Japanese] [D-98-161]
Makoto Ando, Yutaka Akiyama, Kentaro Onizuka and Tamotsu Noguchi:
"ESCAPE: Parallel Tree Search System for Conformational Analysis of
Peptides", Proc. of the 1999 International Conference on Parallel and
Distributed Processing Techniques and Applications, Vol. 3, pp.1537-1543 (1999).
[D-98-193]
Yutaka Akiyama, Kentaro Onizuka, Tamotsu Noguchi, and Makoto Ando: "Biological- and Chemical- Parallel Applications on a PC Cluster", Proc. of the International Symposium on High Performance Computing (ISHPC'99) (Lecture Notes on Computer Sciences. Springer-Verlag), pp.220-233 (1999). [D-98-195]
Kenta Nakai, and Paul Horton:
"PSORT: a program for detecting sorting signals of proteins
and predicting their subcellular localization", trends in Biochemical Sciences, vol. 24 no.1 pp.34-35 (1999).
[D-98-198]
Makoto Ando, Yutaka Akiyama, Kentaro Onizuka, and Tamotsu Noguchi:
"Parallel Tree Search-based Protein Conformation Analysis System
Implemented on a Massively Parallel Computer", IPSJ SIG Notes,
98-MPS-21-5, pp.25-30 (1998). [in Japanese]
[D-98-101]
Tamotsu Noguchi, Yutaka Akiyama, Kentaro Onizuka, and Makoto Ando:
"The classification of protein structures based on the sequential and structural
similarity, and the database of representative protein chains (PDB-REPRDB)",
IPSJ SIG Notes, 98-MPS-21-6, pp.31-36 (1998). [in Japanese]
[D-98-104]
Kentaro Onizuka, Tamotsu Noguchi, Makoto Ando, and Yutaka Akiyama:
"A compressed representation of multiple-dimensional distribution by linear base transformation,
and it's application to residue-pair-relative-distribution of proteins",
IPSJ SIG Notes, 98-MPS-21-5, pp.37-42 (1998). [in Japanese]
[D-98-109]
Paul Horton:
"New Algorithms for Multiple Sequence Alignment",
IPSJ SIG Notes, 98-MPS-22-6, pp.31-36 (1998).
[D-98-117]
Kentaro Onizuka, Tamotsu Noguchi, Makoto Ando, and Yutaka Akiyama:
"A compressed representation of multiple-dimensional distribution by linear base transformation, and its application to protein 3D structure recognition",
IPSJ SIG Notes, 98-MPS-22-13, pp.75-80 (1998). [in Japanese]
[D-98-134]
Yutaka Akiyama: "Improvement of the Back-propagation Learning Rule by Introducing an Entropy Term", IPSJ SIG Notes, 99-MPS-23-1, pp.1-6 (1999). [in Japanese] [D-98-162]
Yutaka Akiyama, Kentaro Onizuka, Tamotsu Noguchi, and Makoto Ando: "Parallel Protein Information Analysis (PAPIA) system.", Proc. of the 1998 RWC Symposium (RWC TR-98001), Real World Computing Partnership, pp.123-128 (1998). [TR-98001]
Yutaka Akiyama: "Development of Parallel Applications", Proc. of the 1998 RWC Symposium (RWC TR-98001), Real World Computing Partnership, pp.19-26 (1998). [TR-98001]
Paul Horton:
"Efficient New Algorithms for Optimally Aligning Short Motifs",
RWC Technical Report (RWC TR-98005) (1998).
[TR-98005]
Tamotsu Noguchi: "Protein secondary structure predictions and structural alignments for CASP3 targets", RWC Technical Report (RWC TR-98009) (1998). [in Japanese] [TR98-009]
Paul Horton:
"An Improvement to the Scoring Bound Used by the Original Tsukuba BB Local Multiple Sequence Alignment Algorithm",
RWC Technical Report (RWC TR-98010) (1999).
[TR98-010]
Yutaka Akiyama, Kiyotaka Misoo, Yoshiharu Omura, Hiroshi Matsumoto, Tamotsu Noguchi, and Kentaro Onizuka: "Parallelization of Space Plasma Particle Simulator KEMPO1", Proc. of the Joint Symposium on Parallel Processing (JSPP)'98, pp.161 (1998). [in Japanese] [D-98-013]
Yutaka Akiyama: "Parallel Protein Information Analysis (PAPIA) system", bit "Introduction to Parallel Programming", Kyoritsu Publishers, pp.199-205 (1998). [in Japanese] [D-98-020]
Yutaka Akiyama: "Parallel Protein Information Analysis (PAPIA) system", "Biosciences and Industry", Vol. 56, No. 7, pp. 31-34 (1998). [in Japanese] [D-98-021]
Yutaka Akiyama, Kentaro Onizuka, Tamotsu Noguchi, and Makoto Ando: "Parallel Protein Information Analysis (PAPIA) system on RWC PC Cluster", ACM Int'l Conf. on Supercomputing (ICS'98), Melbourne (1998). [D-98-073]
Yutaka Akiyama: "A High-speed Protein Information Analysis System on a PC Cluster", Nikkei Science, November 1998, p.112 (1998). [in Japanese] [D-98-087]
Yutaka Akiyama, Kentaro Onizuka, Tamotsu Noguchi, and Makoto Ando: "Development of Biological- and Chemical- Applications on a 64-node PC Cluster", Int'l Workshop on Innovative Architectures for Future Generation High-Performance Processors and Systems (IWIA'98) (1998). [D-98-097]
Yutaka Akiyama, Kentaro Onizuka, Tamotsu Noguchi, and Makoto Ando: "Parallel Protein Information Analysis (PAPIA) system", The 5th Workshop on "Principles of Protein Architecture" (1998). [D-98-124]
Tamotsu Noguchi, Masahiro Ito, Yutaka Akiyama, and Ken Nishikawa:
"Improvement of protein secondary structure prediction using the 3D-1D compatibility algorithm", The 5th Workshop on "Principles of Protein Architecture" (1998).
[D-98-125]
Yutaka Akiyama: "RWC PC Cluster and Parallel Applications Case Study - Parallel Protein Information Analysis (PAPIA) system -", 13th Meeting of Society for Massively Parallel Processing (SMPP) (1998). [D-98-127]
Yutaka Akiyama: "Commodity Parallel Processing and Its Application - Fast Genetic Information Analysis -", IEICE Chugoku-Branch Meeting (1998). [D-98-149]
Yutaka Akiyama, Kentaro Onizuka, Tamotsu Noguchi, and Makoto Ando: "Development of Parallel Protein Information Analysis (PAPIA) system", "Classification, prediction, and design of protein structure" meeting (1999). [D-98-178]
Yutaka Akiyama: "Opinion and Demand on Automatic Parallelization Compilers from a view of Parallel Application Research", Workshop on "Implementation Techniques for Automatic Parallelization Compiler" (1998). [D-98-197]
FY 1997 (Apr.97-Mar.98)
Kentaro Onizuka, Tamotsu Noguchi, and Yutaka Akiyama:
"Parallel PDB Data Retriever 'PDB Diving Booster'"
in High Performance Computing (Polychronopoulos, et.al Eds.),
Lecture Notes in Computer Science 1336, Springer, pp.389-396 (1997).
[D-97-067]
Wataru Fujibuchi, Susumu Goto, Hiroshi Migimatsu, Ikuo Uchiyama,
Atsushi Ogiwara, Yutaka Akiyama, and Minoru Kanehisa:
"DBGET/LinkDB: an Integrated Database Retrieval System",
Proc. of the PSB'98, pp.683-694 (1998).
[D-97-157]
Minoru Saito, Kiyotaka Misoo, Yoshihisa Shizawa, Kazushi Marukawa,
Yutaka Akiyama, Tamotsu Noguchi, and Kentaro Onizuka:
"Parallelization and Performance Evaluation of MD Program AMBER and Barnes-Hut Tree Code",
Proc. of the Joint Symposium on Parallel Processing 1998 (JSPP'98), pp.231-238 (1998). [in Japanese]
[D-97-174]
Makoto Ando, Yoshio Tanaka, Kazuto Kubota, Motohiko Matsuda,
Yutaka Akiyama, and Mitsuhisa Sato:
"Performance Comparison of Shared- and Distributed-Memory
Parallel Computers Using Knapsack Problem",
IPSJ SIG Notes, 97-HPC-67-9, pp.49-54 (1997). [in Japanese]
[D-97-051]
Yasushi Totoki, Yutaka Akiyama, Tamotsu Noguchi,
Kentaro Onizuka, Minoru Saito, and Makoto Ando:
"Multiple Alignment using A* Algorithm and Parallel Iterative Algorithm",
IPSJ SIG Notes, 97-HPC-67-7, pp.37-42 (1997). [in Japanese]
[D-97-053]
Tamotsu Noguchi, Yutaka Akiyama, Kentaro Onizuka, Minoru Saito,
Makoto Ando, and Yoshihisa Shizawa:
"Parallelization of the automatic determination system for
representative protein chains of the Protein Data Bank (PDB)",
IPSJ SIG Notes, 97-HPC-67-6, pp.31-36 (1997). [in Japanese]
[D-97-054]
Yutaka Ishikawa, Mitsuhisa Sato, Tomohiro Kudoh, Yutaka Akiyama, and Junichi Shimada: "Towards a Seamless Parallel Computing System on Distributed Environments", Tech. Rep. of IEICE, CPSY-97-62, pp.83-90 (1997). [in Japanese] [D-97-058]
Kentaro Onizuka, Tamotsu Noguchi, Minoru Saito, and Yutaka Akiyama:
"An Integrated Parallel System for Protein Structure Analysis",
IPSJ SIG Notes, 97-HPC-68-8, pp.45-50 (1997). [in Japanese]
[D-97-092]
Yasushi Totoki, Yutaka Akiyama, Kentaro Onizuka, Tamotsu Noguchi,
Minoru Saito, and Makoto Ando:
"Employing A* Algorithm in Parallel Multiple Protein Sequence Alignment",
IPSJ SIG Notes, 97-MPS-16-4, pp.19-24 (1997). [in Japanese]
[D-97-110]
Minoru Saito, Kiyotaka Misoo, Yoshihisa Shizawa, Kazushi Marukawa, Yutaka Akiyama, Tamotsu Noguchi, and Kentaro Onizuka: "Parallelization and performance evaluation of MD program AMBER and Barnes-Hut tree code", IPSJ SIG Notes, 97-HPC-69-11, pp.61-66 (1997). [in Japanese] [D-97-112]
Yutaka Akiyama, Kentaro Onizuka, Tamotsu Noguchi, Makoto Ando,
and Minoru Saito:
"Parallel Protein Information Analysis (PAPIA) system implemented on RWC PC cluster II",
IPSJ SIG Notes, 97-HPC-70-6, pp.31-36 (1998). [in Japanese]
[D-97-160]
Kentaro Onizuka, Yutaka Akiyama, Tamotsu Noguchi, and Minoru Saito: "PAPIA System An Integrated Parallel Environment for Protein Structure Analysis", RWC Technical Report (RWC TR-97007) (1997). [TR-97-007]
Minoru Saito, Hidetoshi Kono, and Akinori Sarai: "Theoretical studies of the thermal stability of DNA binding protein, c-Myb -- MD simulation / free energy calculation using COSMOS90 --", the 35th Japan biophysics conference, the biophysical society of Japan (1997). [in Japanese] [D-97-035]
Tamotsu Noguchi, Kentaro Onizuka, Yutaka Akiyama, and Minoru Saito: "PDB-REPRDB: A database of representative protein chains in PDB based on both sequential and structural similarity", The 4th Workshop on "Principles of Protein Architecture" (1997). [D-97-105]
Minoru Saito, Hidetoshi Kono, Kenji Sayano, and Akinori Sarai: "Calculations of melting temperatures of proteins by highly parallel molecular dynamics / free-energy perturbations. ", 11th Molecular Simulation Meeting (1997). [D-97-106]
Kentaro Onizuka, Tamotsu Noguchi, Minoru Saito, and Yutaka Akiyama:
"An integrated protein structure analysis system PAPIA",
The 4th Workshop on "Principles of Protein Architecture" (1997).
[D-97-115]
Yutaka Akiyama: "Plasma particle simulation on parallel computers", Parallel Distributed High Performance Computing (PDHPC), Center for Computational Physics, Univ. of Tsukuba (1998). [D-97-180]
Yutaka Akiyama, Kentaro Onizuka, Tamotsu Noguchi, Makoto Ando, and Minoru Saito: "Parallel Protein Information Analysis (PAPIA) system on RWC PC Cluster", Workshop on Global and Cluster Computing (WGCC'98), Tsukuba (1998). []
Minoru Saito: "Parallelized molecular dynamics simulations for large molecular systems; view points of program developers and users" (invited talk), Toward post supercomputing'97, Tokyo Institute of Technology (1997). [in Japanese]
K. Tokuhisa, K. Tsumoto, Y. Nishimiya, N. Kasai, M. Saito, I. Kumagai, and M. Matsushima: "Computer aided amino acid sequence design for anti-human lysozyme antibody", The 4th Workshop on "Principles of Protein Architecture" (1997).
K. Tsumoto, K. Tokuhisa, Y. Nishimiya, N. Kasai, M. Saito, M. Matsushima, and I. Kumagai: "Experimental inspection for designed anti-hen lysozyme antibody, HyHEL10 mutants with specificity toward human lysozyme", The 4th Workshop on "Principles of Protein Architecture" (1997).
FY 1996 (Apr.96-Mar.97)
Tamotsu Noguchi, Kentaro Onizuka, Yutaka Akiyama, and Minoru Saito:
"PDB-REPRDB: A Database of Representative Protein Chains in PDB
(Protein Data Bank)", Proc. of the fifth Int'l Conf. on Intelligent
Systems for Molecular Biology, pp.214-217, AAAI Press (1997).
[P-96-065]
Minoru Saito: "Space, time, and energy resolutions of molecular dynamics simulations", the 34th Japan biophysics conference, the biophysical society of Japan (1996). [in Japanese] [P-96-013]
Minoru Saito: "Quantitative simulations of proteins and nucleic acids", the 45th polymer conference (1996). [in Japanese] [P-96-014]
Minoru Saito: "Quantitative calculations of relative melting temperatures of mutant proteins by MD simulation/free energy perturbation method", Energetic basis of structural biology: Molecular insight from thermodynamics applied to macromolecules in water (1996). [in Japanese] [P-96-019]
Minoru Saito: "An encounter of protein simulations with stellar-system simulations", CBI NEWS, Vol. 16, No. 10, pp. 1-3 (1996). [in Japanese] [P-96-036]
Minoru Saito, Hidetoshi Kono, and Akinori Sarai: "Computer simulations for the thermal stability of a DNA binding protein, c-Myb", RIKEN symposium (1996). [in Japanese] [P-96-047]
Minoru Saito: "Importance of counter ions for MD simulations of proteins and nucleic acids", Institute of Molecular Science res. meet. (1996). [in Japanese] [P-96-048]
Minoru Saito, and Akinori Sarai: "Relative binding free energy calculations for a protein-DNA complex by molecular dynamics simulations", the 10th Molecular simulation conference (1996). [in Japanese] [P-96-049]
Kentaro Onizuka, Tamotsu Noguchi, and Yutaka Akiyama: "Parallel PDB Data Retriever 'PDB Diving Booster'", the fifth Int'l Conf. on Intelligent Systems for Molecular Biology (1997). [D-96-064]
Yutaka Akiyama, Kiyotaka Misoo, Kentaro Onizuka, Minoru Saito, Yoshiharu Omura, and Hiroshi Matsumoto "Parallelization of Electromagnetic Particle Code: KEMPO1", The Fifth International School/Symposium for Space Simulations (1996). [P-96-075]
[Old Parallel Application TRC Lab.] http://www.rwcp.or.jp/lab/pdappl/
Last updated: 12 October, 2000