Edward Wijaya
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- I belong to Sequence Analysis Team under Dr. Paul Horton. I received my Ph.D. from Department of Computer Science of National University of Singapore with Dr. Sung Wing-Kin and Dr. Kanagasabai Rajaraman.
My main research interest is on next generation sequencing error correction modeling, transcriptomics, sequence alignment statistics, marginal distribution analysis of gene expression and regulatory genomics.
Publications
- K.Y. Yun, M.R. Park, B. Mohanty, V. Herath, F. Xu, R. Mauleon, E. Wijaya, V.B. Bajic, R. Bruskiewich, B.G. de Los Reyes, Transcriptional regulatory network triggered by oxidative signals configures the early response mechanisms of japonica rice to chilling stress, in BMC Plant Biology, 10(16), 2010. [PDF]
- E. Wijaya, M. C. Frith, Y. Suzuki and P. Horton, RECOUNT: Expectation maximization based error correction tool for next generation sequencing data, in Proc. 20th International Conference on Genome Informatics (GIW), 2009. [PDF]
- E. Wijaya, H. Harada and P. Horton, Characterizing Genes by Marginal Expression Distribution, in Proc. Conference of Bioscience and Biotechnology (BSBT), 2008. [PDF]
- E. Wijaya, S.M. Yiu, K.Rajaraman, N.T. Son and W.K.Sung, MotifVoter: a novel ensemble method for fine grained integration of generic motif finders, Bioinformatics, 24(20): 2288-2295, 2008. [PDF]
- E. Wijaya, K. Rajaraman, S.M. Yiu and W.K. Sung, Detection of Generic Spaced Motifs Using Submotif Pattern Mining, Bioinformatics, 23(12): 1476-1485, 2007. [PDF]
- B. Mohanty, B.Ashok and E. Wijaya, Modelling and detection of transcription termination sites of genes induced during low oxygen response in Arabidopsis, in Proc. 9th Conference of the International Society for Plant Anaerobiosis, 2007. [PDF]
- E. Wijaya and K. Rajaraman, Identification of spaced regulatory sites via submotif modelling, in Proc. 3rd RECOMB Workshop on Regulatory Genomics, 2006. [PDF]
- E. Wijaya, K. Rajaraman, M. Bramahchary, et.al., A Hybrid Algorithm for Motif Discovery from DNA Sequences, in 3rd Asia-Pacific Bioinformatics Conference, 2005. [PDF]
Scientific Softwares
- RECOUNT (2009)
- MotifVoter (2008)
- SPACE (2007)