Research

My research interests include:

• Bioinformatics
• DNA/protein sequence analysis and alignment
• knowledge discovery from microarray data
• graph-based representation of biological data
• use of various biological databases
• management of biomedical texts
• Machine learning
• classification
• decision trees
• probabilistic models
• Algorithms and data structures
• Text management
• text compression
• information retrieval / passage retrieval
• natural language processing (phrase derivation, in particular)

My present/past collaborators and their current locations:

• University of Melbourne, Australia
  • Alistair Moffat
  • Vo Ngoc Anh
• Kyoto University, Japan
  • Susumu Goto
  • Hiroshi Mamitsuka
  • Ichigaku Takigawa
• Computational Biology Research Center
  • Paul Horton
• Other locations
  • Hajime Harada
  • Nelson Hayes (Hiroshima University, Japan)
  • Szymon M. Kiełbasa (Max Planck Institute for Molecular Genetics, Germany)
  • Larisa Kiseleva
  • Åsa Wheelock (Karolinska Institutet, Sweden)

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