Koji Tsuda Homepage

Koji Tsuda, Dr.

Senior Research Scientist
Leader, Machine Learning Research Group
Computational Biology Research Center
National Institute of Advanced Industrial Science and Technology

Koji Tsuda is Senior Research Scientist at AIST Computational Biology Research Center. After completing his Dr.Eng. in Kyoto University in 1998, he joined former Electrotechnical Laboratory (ETL), Tsukuba, Japan, as Research Scientist. When ETL is reorganized as AIST in 2001, he joined newly established Computational Biology Research Center, Tokyo, Japan. In 2000-2001, he worked at GMD FIRST (current Fraunhofer FIRST) in Berlin, Germany, as Visiting Scientist. In 2003-2004 and 2006-2008, he worked at Max Planck Institute for Biological Cybernetics, Tuebingen, Germany, first as Research Scientist and later as Project Leader. He has published more than 80 papers in refereed conferences and journals, and served as an area chair and a program committee member in leading machine learning conferences such as NIPS and ICML. IPSJ Nagao Award (2009).

Publications

Publications in Japanese

Joint Appointments
- Group Leader, ERATO Minato Project, Japan Science and Technology Agency (JST)
- Visiting Professor, Hokkaido University
- Visiting Professor, Institute of Statistical Mathematics
- Visiting Associate Professor (FIRST), National Institute of Informatics
Codes
- Indexing Graphs with Wavelet Tree (Tabei and Tsuda, SDM, 2011)
- SlideSort (Shimizu and Tsuda, Bioinformatics, 2011)
- SketchSort (Tabei et al., ACML, 2010)
- Dense cluster enumeration in a Tensor (Georgii et al., Machine Learning, 2011)
- Dense module enumeration (Georgii et al., Bioinformatics, 2009)
- Graph Boosting MATLAB Toolbox (Saigo et al, Machine Learning, 2009)
- Graph Clustering with Dirichlet Process (Kurihara et al., SDM 2008)
- Itemset boosting (Saigo et al., Bioinformatics, 2007)
- Sequence boosting (Nowozin et al., ICCV 2007)
- Entire Regularization Paths in Graph Mining (Tsuda, ICML 2007)
- Semi-Supervised Classification with Multiple Networks (Tsuda et al., ECCB 2005)
- Locally Constrained Diffusion Kernels (Tsuda and Noble, ISMB 2004)
Websites

DICS @ MIPS (Dietmann et al., Bioinformatics, 2009)
RNAmine (Hamada et al., Bioinformatics, 2006)

CV (PDF) , Complete publication list (PDF)

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